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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
37 lines
944 B
YAML
37 lines
944 B
YAML
name: stringtie_merge
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description: Merges the annotation gtf file and the stringtie output gtf files
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keywords:
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- merge
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- gtf
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- reference
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tools:
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- stringtie2:
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description: |
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Transcript assembly and quantification for RNA-Seq
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homepage: https://ccb.jhu.edu/software/stringtie/index.shtml
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documentation: https://ccb.jhu.edu/software/stringtie/index.shtml?t=manual
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licence: ["MIT"]
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input:
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- stringtie_gtf:
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type: file
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description: |
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Stringtie transcript gtf output(s).
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pattern: "*.gtf"
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- annotation_gtf:
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type: file
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description: |
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Annotation gtf file.
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pattern: "*.gtf"
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output:
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- merged_gtf:
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type: map
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description: |
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Merged gtf from annotation and stringtie output gtfs.
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pattern: "*.gtf"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@yuukiiwa"
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