mirror of
https://github.com/MillironX/nf-core_modules.git
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74b569b66a
* Created epang module from template * Module seems to be working * Namechange to epang_place * Move model to meta map * Fix linting problems * Prettier * Forgot --threads! * Moved module to epang * Move reference file params * Directory output * Make all args optional * Added inputs for three other types of file arguments * Update modules/epang/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Add directory to output doc, reorder the other * Make model specification less hardcoded Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
12 lines
528 B
YAML
12 lines
528 B
YAML
- name: epang test_epang
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command: nextflow run ./tests/modules/epang -entry test_epang -c ./tests/config/nextflow.config -c ./tests/modules/epang/nextflow.config
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tags:
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- epang
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files:
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- path: output/epang/test.epa_info.log
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contains:
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- "INFO 3 Sequences done"
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- path: output/epang/test.epa_result.jplace
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contains:
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- '"placements":'
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- '"metadata": {"invocation": "epa-ng --model LG --threads 2 --query query.alnfaa.gz --ref-msa reference.alnfaa.gz --tree reference.newick "}'
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