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https://github.com/MillironX/nf-core_modules.git
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0ab15c5ee9
Bump checkM version and add support for pre-defined database Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>
24 lines
775 B
Text
24 lines
775 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { CHECKM_LINEAGEWF } from '../../../../modules/checkm/lineagewf/main.nf'
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workflow test_checkm_lineagewf {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true) ]
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fasta_ext = 'fasta'
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CHECKM_LINEAGEWF ( input, fasta_ext, [] )
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}
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workflow test_checkm_lineagewf_multi {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)] ]
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fasta_ext = 'fasta'
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CHECKM_LINEAGEWF ( input, fasta_ext, [] )
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}
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