mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
19 lines
607 B
Text
19 lines
607 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { MERYL_COUNT } from '../../../modules/meryl/count/main.nf'
|
|
include { MERYL_HISTOGRAM } from '../../../modules/meryl/histogram/main.nf'
|
|
include { GENOMESCOPE2 } from '../../../modules/genomescope2/main.nf'
|
|
|
|
workflow test_genomescope2 {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true)
|
|
]
|
|
|
|
MERYL_COUNT ( input )
|
|
MERYL_HISTOGRAM ( MERYL_COUNT.out.meryl_db )
|
|
GENOMESCOPE2 ( MERYL_HISTOGRAM.out.hist )
|
|
}
|