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6d6e3a018f
* add module for mykrobe predict and genotyphi parse * Update meta.yml Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
15 lines
381 B
Text
15 lines
381 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MYKROBE_PREDICT } from '../../../../modules/mykrobe/predict/main.nf'
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workflow test_mykrobe_predict {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
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]
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MYKROBE_PREDICT ( input, "typhi" )
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}
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