mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
2f1555bf77
* feat(pints): Add initial caller module * docs(pints): Add initial documentation * chore: Add TODOs * test(pypints): Use docker image for singularity The image doesn't exist yet for some reason * test(pints): Remove unidirectional peaks hash * style(pints): Align emits
21 lines
655 B
Text
21 lines
655 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PINTS_CALLER } from '../../../../modules/pints/caller/main.nf'
|
|
|
|
workflow test_pints_caller {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
// FIXME Fails if it doesn't find any signals
|
|
[file("https://raw.githubusercontent.com/Kraus-Lab/groHMM/master/inst/extdata/S0mR1.bam", checkIfExists: true),
|
|
file("https://raw.githubusercontent.com/Kraus-Lab/groHMM/master/inst/extdata/S40mR1.bam", checkIfExists: true)]
|
|
]
|
|
|
|
PINTS_CALLER ( input )
|
|
}
|
|
|
|
// TODO Test single bam input
|
|
// TODO Test single bigwig input
|
|
// TODO Test multiple bigwig input
|