nf-core_modules/tests/modules/seqwish/induce
Simon Heumos 1d668eefa2
Bump seqwish/induce to v0.7.6 (#2083)
* Update seqwish to version 0.7.2

* seqwish can work with a comma-separated list of PAFs

* level with nf-core/modules master branch

* update seqwish/induce to v0.7.6

* add pangenome test data

* test seqwish/induce v0.7.6 with pangenomics test data

* we already have pointed to the pangenomics test data sets

* update paths to test data

* add path to bgzipped fa, gzi, fai

* remove one tab

* remove one tab

* actually execute the 2nd test

* try to fix versions.yml

* pangenomic tests can be run in their own subworkflow

* maybe the csv input is the problem

* remove space as suggested by Rike

* csv input was not the problem

* update test.yml

* typo

* enable pangenome tests

* add md5sum for pangenomic test

* Update tests/modules/seqwish/induce/test.yml

Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>

* PAF input is a list of files

* beautify comment

Co-authored-by: Michael L Heuer <heuermh@acm.org>
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
2022-09-26 17:01:21 +01:00
..
main.nf Bump seqwish/induce to v0.7.6 (#2083) 2022-09-26 17:01:21 +01:00
nextflow.config Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
test.yml Bump seqwish/induce to v0.7.6 (#2083) 2022-09-26 17:01:21 +01:00