nf-core_modules/tests/modules/ultra/index/nextflow.config
Sébastien Guizard 60c65fb386
New modules: ultra/index and ultra/align (#1830)
* Add ultra/index and ultra/align modules

* Correct tag and prefix

* Fix typos

* Remove SAMTOOLS SORT from test

* Update: Convert sam to bam

* Add tag to docker image

* Fix typo

* Add args2 for samtools
2022-07-04 07:46:49 +01:00

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: GFFREAD {
ext.args = '--sort-alpha --keep-genes -T'
ext.prefix = { "${gff.baseName}_sorted" }
}
withName: ULTRA_INDEX {
ext.args = '--disable_infer'
}
}