mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
39 lines
1.7 KiB
YAML
39 lines
1.7 KiB
YAML
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/genome.bed.idx
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- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed_gz
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed_gz -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/genome.bed.gz.tbi
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md5sum: 4bc51e2351a6e83f20e13be75861f941
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- path: output/gatk4/versions.yml
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md5sum: e574bd51e4c6d6ded5dcf3cd865dbf4a
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- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/test.genome.vcf.idx
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- path: output/gatk4/versions.yml
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md5sum: fee70d33f4379ced035d8e851a3e08c6
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- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf_gz
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command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf_gz -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/indexfeaturefile
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files:
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- path: output/gatk4/test.genome.vcf.gz.tbi
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md5sum: fedd68eaddf8d31257853d9da8325bd3
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- path: output/gatk4/versions.yml
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md5sum: 29bddb019f0fe04218cfc07f8203e022
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