nf-core_modules/tests/modules/genescopefk/main.nf
2022-06-14 20:49:06 +02:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { FASTK_FASTK } from '../../../modules/fastk/fastk/main.nf'
include { FASTK_HISTEX } from '../../../modules/fastk/histex/main.nf'
include { GENESCOPEFK } from '../../../modules/genescopefk/main.nf'
workflow test_genescopefk {
input = [
[ id:'test' , single_end: true ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
]
FASTK_FASTK ( input )
FASTK_HISTEX ( FASTK_FASTK.out.hist )
GENESCOPEFK ( FASTK_HISTEX.out.hist )
}