mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
240ee4328c
* fix: remove left-over unnecessary code * Make gzipping optional for DAS_Tool scaffolds2bin * Add optional unzipping * Make gunzip optional for DAS_Tool scaffolds2bin * Apply suggestions from code review Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update modules/dastool/scaffolds2bin/meta.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com>
55 lines
1.6 KiB
YAML
55 lines
1.6 KiB
YAML
name: dastool_scaffolds2bin
|
|
description: Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format
|
|
keywords:
|
|
- binning
|
|
- das tool
|
|
- table
|
|
- de novo
|
|
- bins
|
|
- contigs
|
|
- assembly
|
|
- das_tool
|
|
tools:
|
|
- dastool:
|
|
description: |
|
|
DAS Tool is an automated method that integrates the results
|
|
of a flexible number of binning algorithms to calculate an optimized, non-redundant
|
|
set of bins from a single assembly.
|
|
|
|
homepage: https://github.com/cmks/DAS_Tool
|
|
documentation: https://github.com/cmks/DAS_Tool
|
|
tool_dev_url: https://github.com/cmks/DAS_Tool
|
|
doi: "10.1038/s41564-018-0171-1"
|
|
licence: ["BSD"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Fasta or list of fasta files recommended to be gathered via with .collect() of bins
|
|
pattern: "*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}"
|
|
- extension:
|
|
type: val
|
|
description: Fasta file extension (fa | fas | fasta | ...), but without .gz suffix, even if gzipped input.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- scaffolds2bin:
|
|
type: file
|
|
description: tabular scaffolds2bin file for DAS tool input
|
|
pattern: "*.scaffolds2bin.tsv"
|
|
|
|
authors:
|
|
- "@maxibor"
|