nf-core_modules/modules/agrvate/meta.yml

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1.3 KiB
YAML

name: agrvate
description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
keywords:
- fasta
- virulence
- Staphylococcus aureus
tools:
- agrvate:
description: Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
homepage: https://github.com/VishnuRaghuram94/AgrVATE
documentation: https://github.com/VishnuRaghuram94/AgrVATE
tool_dev_url: https://github.com/VishnuRaghuram94/AgrVATE
doi: ""
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: A Staphylococcus aureus fasta file.
pattern: "*.fasta"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- summary:
type: file
description: A summary of the agrvate assessement
pattern: "*-summary.tab"
- results_dir:
type: directory
description: Results of the agrvate assessement
pattern: "*-results"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@abhi18av"