mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
f080015754
* style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
49 lines
1.4 KiB
YAML
49 lines
1.4 KiB
YAML
name: deeptools_bamcoverage
|
|
description: This tool takes an alignment of reads or fragments as input (BAM file) and generates a coverage track (bigWig or bedGraph) as output.
|
|
keywords:
|
|
- sort
|
|
tools:
|
|
- deeptools:
|
|
description: A set of user-friendly tools for normalization and visualzation of deep-sequencing data
|
|
homepage: https://deeptools.readthedocs.io/en/develop/content/tools/bamCoverage.html
|
|
documentation: https://deeptools.readthedocs.io/en/develop/content/tools/bamCoverage.html
|
|
tool_dev_url: https://github.com/deeptools/deepTools/
|
|
doi: "https://doi.org/10.1093/nar/gkw257"
|
|
licence: ["GPL v3"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- input:
|
|
type: file
|
|
description: BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
- input_index:
|
|
type: file
|
|
description: BAM/CRAM index file
|
|
pattern: "*.{bai,crai}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bigWig:
|
|
type: file
|
|
description: BigWig file
|
|
pattern: "*.bigWig"
|
|
- bedgraph:
|
|
type: file
|
|
description: Bedgraph file
|
|
pattern: "*.bedgraph"
|
|
|
|
authors:
|
|
- "@FriederikeHanssen"
|