mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
527ccdb419
* add racon * add miniasm module * edit miniasm module * edit miniasm module * Update tests/modules/racon/main.nf Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update tests/modules/racon/test.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update modules/miniasm/meta.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> * Update main.nf Add some spaces. * Update meta.yml Correct DOI * Update main.nf * Apply suggestions from code review * Update tests/modules/miniasm/test.yml Co-authored-by: Daniel Straub <42973691+d4straub@users.noreply.github.com> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
51 lines
1.3 KiB
YAML
51 lines
1.3 KiB
YAML
name: miniasm
|
|
description: A very fast OLC-based de novo assembler for noisy long reads
|
|
keywords:
|
|
- assembly
|
|
- pacbio
|
|
- nanopore
|
|
tools:
|
|
- miniasm:
|
|
description: Ultrafast de novo assembly for long noisy reads (though having no consensus step)
|
|
homepage: https://github.com/lh3/miniasm
|
|
documentation: https://github.com/lh3/miniasm
|
|
tool_dev_url: https://github.com/lh3/miniasm
|
|
doi: "10.1093/bioinformatics/btw152"
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: List of input PacBio/ONT FastQ files.
|
|
pattern: "*.{fastq,fastq.gz,fq,fq.gz}"
|
|
- paf:
|
|
type: file
|
|
description: Alignment in PAF format
|
|
pattern: "*{.paf,.paf.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- gfa:
|
|
type: file
|
|
description: Assembly graph
|
|
pattern: "*.gfa.gz"
|
|
- assembly:
|
|
type: file
|
|
description: Genome assembly
|
|
pattern: "*.fasta.gz"
|
|
|
|
authors:
|
|
- "@avantonder"
|