Nicholas Toda 53109d53c0 add gatk4/fastqtosam #198 (#311) ... * Inital nf-core create * remove TODO comments, input and output files defined * add get version in script * added flow control for single/paired end data * added script main commands * removed completed TODO messages * removed completed TODO messages * added software info * added input reads description * added output description * added description and keywords * added single end test * added paired end test * fixed sample name flag * fixed reverse read variable * added test yaml * update for pytest_software * order in pytest_software was different * replaced functions.nf with copy from another module * simplify read command line Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Nicholas TODA <nicholas.toda@mnhn.fr> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2021-03-22 18:26:02 +00:00
..
main.nf	add gatk4/fastqtosam #198 (#311)	2021-03-22 18:26:02 +00:00
test.yml	add gatk4/fastqtosam #198 (#311)	2021-03-22 18:26:02 +00:00