millironx/nf-core_modules
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nf-core_modules/modules/gatk4
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FriederikeHanssen 50eafb19c6
Update version for log4j vulnerability (#1176) 
* Update version for log4j vulnerability

* update checksums

* update checksums

* update checksums

* Remove todo string

* remove werid output paths

* remove werid output paths

* remove werid output paths

* Update various checksums

* Update various checksums

* Remove unstable md5sums

* Update md5sums

* Fix pileupsummary

* Fix genotypegvcfs

* Update test files mutect2

* hm genotypevcf updated again

* Update some mutect checksums and whatnot

* Fix last mutect checksum

* Apply suggestion to use mtochondria data instead
2021-12-20 17:10:49 +01:00
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applybqsr Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
applyvqsr Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
baserecalibrator Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
bedtointervallist Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
calculatecontamination Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
createsequencedictionary Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
createsomaticpanelofnormals Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
estimatelibrarycomplexity Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
fastqtosam Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
filtermutectcalls Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
gatherbqsrreports Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
genomicsdbimport Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
genotypegvcfs Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
getpileupsummaries Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
haplotypecaller Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
indexfeaturefile Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
intervallisttools Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
learnreadorientationmodel Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
markduplicates Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
mergebamalignment Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
mergevcfs Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
mutect2 Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
revertsam Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
samtofastq Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
splitncigarreads Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
variantfiltration Update version for log4j vulnerability (#1176) 2021-12-20 17:10:49 +01:00
variantrecalibrator add module: Variantrecalibrator (#1088) 2021-12-16 10:54:49 +00:00