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28 lines
1 KiB
Text
28 lines
1 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_CONCAT } from '../../../../modules/bcftools/concat/main.nf'
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workflow test_bcftools_concat_tbi {
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input = [ [ id:'test3' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test2_vcf_gz'], checkIfExists: true) ],
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[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test2_vcf_gz_tbi'], checkIfExists: true) ]
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]
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BCFTOOLS_CONCAT ( input )
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}
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workflow test_bcftools_concat_no_tbi {
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input = [ [ id:'test3' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test2_vcf_gz'], checkIfExists: true) ],
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[]
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]
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BCFTOOLS_CONCAT ( input )
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}
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