GCJMackenzie 54e0ac4ed9 add module: Variantrecalibrator (#1088) ... * committing to pull updated nf-core files * saving changes to checout other branch * committing progress so far, difficulty with test data * uploading to be used as draft PR * fix linting error in meta.yml * attempt to group reference inputs together * updated input format for resources * meta.yml updated with new resource names * added output channel for recal index * module only takes single vcf file input now * committing to checkout * update to new syntax, remove indel test for now * updated to use memory options and new test data * Update modules/gatk4/variantrecalibrator/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update main.nf * Update modules/gatk4/variantrecalibrator/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * remove duplicate test keys from test_data.config Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>		2021-12-16 10:54:49 +00:00
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nextflow.config	Update all modules to new NF DSL2 syntax (#1099)	2021-11-26 07:58:40 +00:00
pytest_modules.yml	add module: Variantrecalibrator (#1088)	2021-12-16 10:54:49 +00:00
test_data.config	Add applyvqsr (#1101)	2021-12-16 08:44:50 +00:00