mirror of
https://github.com/MillironX/nf-core_modules.git
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50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
17 lines
879 B
YAML
17 lines
879 B
YAML
- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_just_variants
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command: nextflow run ./tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_just_variants -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/getpileupsummaries/nextflow.config
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tags:
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- gatk4
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- gatk4/getpileupsummaries
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files:
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- path: output/gatk4/test.pileups.table
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md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
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- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites
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command: nextflow run ./tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/getpileupsummaries/nextflow.config
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tags:
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- gatk4
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- gatk4/getpileupsummaries
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files:
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- path: output/gatk4/test.pileups.table
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md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
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