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https://github.com/MillironX/nf-core_modules.git
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ee915a43e4
* update svdb merge * fix undefined variable error * remove prio join in the script block * fix error * fix error again * update tests and refactor
26 lines
795 B
Text
26 lines
795 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SVDB_MERGE } from '../../../../modules/svdb/merge/main.nf'
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workflow test_svdb_merge {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test2_vcf'], checkIfExists: true) ]
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]
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priority = [ 'tiddit', 'cnvnator']
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SVDB_MERGE ( input, priority )
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}
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workflow test_svdb_merge_noprio {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test2_vcf'], checkIfExists: true) ]
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]
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SVDB_MERGE ( input, [] )
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}
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