..
adapterremoval
Update restructured paths ( #380 )
2021-03-24 18:26:54 +00:00
allelecounter
Update test data paths. ( #375 )
2021-03-24 18:18:01 +00:00
bandage /image
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
bcftools
update test data paths ( #373 )
2021-03-24 18:14:11 +00:00
bedtools
Update bedtools modules with config logic ( #369 )
2021-03-24 14:14:19 +00:00
bismark
Fixing vcftools and bismark tests ( #383 )
2021-03-25 09:12:08 +00:00
blast
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
bowtie
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
bowtie2
Fix some module test after adapting test config approach ( #379 )
2021-03-24 18:29:41 +00:00
bwa
Update test paths in bwa mappers ( #387 )
2021-03-25 09:24:21 +00:00
bwamem2
Update test paths in bwa mappers ( #387 )
2021-03-25 09:24:21 +00:00
bwameth
Fix some module test after adapting test config approach ( #379 )
2021-03-24 18:29:41 +00:00
cat /fastq
Fix some module tests after switching to config data ( #386 )
2021-03-24 18:28:07 +00:00
cnvkit
Update test data paths. ( #375 )
2021-03-24 18:18:01 +00:00
cutadapt
Update test data paths. ( #375 )
2021-03-24 18:18:01 +00:00
dsh
Update restructured paths ( #380 )
2021-03-24 18:26:54 +00:00
fastp
modify fastp tests ( #367 )
2021-03-24 17:08:59 +01:00
fastqc
Use a config containing all test data for module tests ( #365 )
2021-03-24 13:07:37 +00:00
flash
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
gatk4
update test data paths ( #373 )
2021-03-24 18:14:11 +00:00
gffread
Fixing a bunch of module tests ( #370 )
2021-03-24 17:36:29 +00:00
gunzip
Update test data paths. ( #375 )
2021-03-24 18:18:01 +00:00
homer /annotatepeaks
Fixing a bunch of module tests ( #370 )
2021-03-24 17:36:29 +00:00
ivar
Update test data paths. ( #375 )
2021-03-24 18:18:01 +00:00
kallisto /index
Add module kallisto/index ( #357 )
2021-03-24 12:25:39 +00:00
kraken2 /run
Fix some module tests after switching to config data ( #386 )
2021-03-24 18:28:07 +00:00
methyldackel
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
minia
Fixing a bunch of module tests ( #370 )
2021-03-24 17:36:29 +00:00
minimap2 /align
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
mosdepth
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
multiqc
Fix some module test after adapting test config approach ( #379 )
2021-03-24 18:29:41 +00:00
optitype
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
pangolin
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
picard
Fix a bunch of failing tests after switching to test config ( #378 )
2021-03-24 18:28:54 +00:00
preseq /lcextrap
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
prodigal
Update test data paths. ( #375 )
2021-03-24 18:18:01 +00:00
prokka
Update test data paths. ( #375 )
2021-03-24 18:18:01 +00:00
qualimap /bamqc
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
quast
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
salmon
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
samtools
Update samtools modules with config logic ( #381 )
2021-03-24 18:15:30 +00:00
seacr /callpeak
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
seqkit /split2
Seqkit/split2 test path update ( #372 )
2021-03-24 17:05:43 +01:00
sequenzautils /gcwiggle
Fixing a bunch of module tests ( #370 )
2021-03-24 17:36:29 +00:00
seqwish /induce
Fixing a bunch of module tests ( #370 )
2021-03-24 17:36:29 +00:00
shovill
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
spades
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
star
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
strelka /germline
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
stringtie
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
tabix
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
tiddit /sv
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
trimgalore
Fix a bunch of failing tests after switching to test config ( #378 )
2021-03-24 18:28:54 +00:00
ucsc
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
unicycler
Re-organise all test data ( #354 )
2021-03-24 09:53:41 +00:00
untar
Fix some module tests after switching to config data ( #386 )
2021-03-24 18:28:07 +00:00
vcftools
Fixing vcftools and bismark tests ( #383 )
2021-03-25 09:12:08 +00:00
yara
Add YARA module ( #353 )
2021-03-24 17:14:52 +01:00
555f1710e0