mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 23:43:19 -05:00
28 lines
1.2 KiB
YAML
28 lines
1.2 KiB
YAML
- name: gatk4 applybqsr test_gatk4_applybqsr_spark
|
|
command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsrspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: 1901c819fcba0fdd5e2482e6dc8285ef
|
|
- path: output/gatk4/versions.yml
|
|
|
|
- name: gatk4 applybqsr test_gatk4_applybqsr_spark_intervals
|
|
command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsrspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
- path: output/gatk4/versions.yml
|
|
|
|
- name: gatk4 applybqsr test_gatk4_applybqsr_spark_cram
|
|
command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsrspark
|
|
files:
|
|
- path: output/gatk4/test.cram
|
|
md5sum: 60f7c822a9f2833e11eb7bfd16e4421f
|
|
- path: output/gatk4/versions.yml
|