mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 23:43:19 -05:00
f080015754
* style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
31 lines
980 B
YAML
31 lines
980 B
YAML
- name: hmmer hmmsearch test_hmmer_hmmsearch
|
|
command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch -c tests/config/nextflow.config
|
|
tags:
|
|
- hmmer/hmmsearch
|
|
- hmmer
|
|
files:
|
|
- path: output/hmmer/test.txt.gz
|
|
contains:
|
|
- "[ok]"
|
|
- path: output/hmmer/versions.yml
|
|
md5sum: ed0808c10abd205c6bd0fb01f45259bb
|
|
|
|
- name: hmmer hmmsearch test_hmmer_hmmsearch_optional
|
|
command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch_optional -c tests/config/nextflow.config
|
|
tags:
|
|
- hmmer/hmmsearch
|
|
- hmmer
|
|
files:
|
|
- path: output/hmmer/test.sto.gz
|
|
md5sum: d3121aa33455074c566fb7f8fdcda7b0
|
|
- path: output/hmmer/test.domtbl.gz
|
|
contains:
|
|
- "# [ok]"
|
|
- path: output/hmmer/test.tbl.gz
|
|
contains:
|
|
- "# [ok]"
|
|
- path: output/hmmer/test.txt.gz
|
|
contains:
|
|
- "[ok]"
|
|
- path: output/hmmer/versions.yml
|
|
md5sum: ebdcb08ae540e840f7b5c4c75a3a2993
|