mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 23:43:19 -05:00
e687c7025a
* add plink2_extract * fix test yml path * Update modules/plink2/extract/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/plink2/extract/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * compress output * add DOI * make outputs less ambiguous * update test for compressed output * brain is dumb * Update modules/plink2/extract/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
12 lines
305 B
Text
12 lines
305 B
Text
process {
|
|
|
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
|
|
|
withName: PLINK2_VCF {
|
|
ext.args = '--make-pgen --set-missing-var-ids @:#:\\$1:\\$2'
|
|
}
|
|
|
|
withName: PLINK2_EXTRACT {
|
|
ext.prefix = { "${meta.id}.extract" }
|
|
}
|
|
}
|