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https://github.com/MillironX/nf-core_modules.git
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60c65fb386
* Add ultra/index and ultra/align modules * Correct tag and prefix * Fix typos * Remove SAMTOOLS SORT from test * Update: Convert sam to bam * Add tag to docker image * Fix typo * Add args2 for samtools
15 lines
483 B
Text
15 lines
483 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ULTRA_INDEX } from '../../../../modules/ultra/index/main.nf'
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include { GFFREAD } from '../../../../modules/gffread/main.nf'
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workflow test_ultra_index {
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genome = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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gtf = file(params.test_data['homo_sapiens']['genome']['genome_gtf'] , checkIfExists: true)
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GFFREAD ( gtf )
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ULTRA_INDEX ( genome, GFFREAD.out.gtf )
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}
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