nf-core_modules/modules/sratools/fasterqdump/meta.yml
Matthias Hörtenhuber e745e167c1
Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00

42 lines
1.1 KiB
YAML

name: sratools_fasterqdump
description: Extract sequencing reads in FASTQ format from a given NCBI Sequence Read Archive (SRA).
keywords:
- sequencing
- FASTQ
- dump
tools:
- sratools:
description: SRA Toolkit and SDK from NCBI
homepage: https://github.com/ncbi/sra-tools
documentation: https://github.com/ncbi/sra-tools/wiki
tool_dev_url: https://github.com/ncbi/sra-tools
licence: ["US-Government-Work"]
input:
- meta:
type: map
description: >
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- sra:
type: directory
description: Directory containing ETL data for the given SRA.
pattern: "*/*.sra"
output:
- meta:
type: map
description: >
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- reads:
type: file
description: Extracted FASTQ file or files if the sequencing reads are paired-end.
pattern: "*.fastq.gz"
authors:
- "@Midnighter"