Anthony Underwood 104f896a26 Artic vbz compression (#1205) ... * Add functionality to handle vbz compression In order for nanopolish to be able handle the default compression for Mk1C Minions (vbz) it must be aware of where to find the plugin. Exporting the HDF5_PLUGIN_PATH found in the conda install (also used to make the biocontainer image) is the solution * Make the HDF5_PLUGIN_PATH more configurable Allow the HDF5_PLUGIN_PATH to be changed via a section in a config file e.g ``` params { modules { ..... 'nanopore_artic_minion' { ..... hd5_plugin_path = '/usr/local/lib/python3.6/site-packages/ont_fast5_api/vbz_plugin' } ...... } } ``` * Update modules/artic/minion/main.nf * Export HDF5_PLUGIN_PATH The HDF5_PLUGIN_PATH variable should be exported for `artic minion` to use it Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2022-01-13 01:05:01 +00:00
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guppyplex	Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)	2021-12-02 12:39:55 +00:00
minion	Artic vbz compression (#1205)	2022-01-13 01:05:01 +00:00