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https://github.com/MillironX/nf-core_modules.git
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080320765c
* 📦 NEW: Add bamtools/convert module * 👌 IMPROVE: Update output channel name, Add tests for each output format * 👌 IMPROVE: Add error test * 🐛 FIX: Remove custom tags Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
90 lines
3.2 KiB
YAML
90 lines
3.2 KiB
YAML
- name: bamtools convert test_bamtools_convert_ext_error
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_ext_error -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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exit_code: 1
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- name: bamtools convert test_bamtools_convert_noext_error
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_noext_error -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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exit_code: 1
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- name: bamtools convert test_bamtools_convert_bed
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_bed -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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files:
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- path: output/bamtools/test.bed
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md5sum: 4e34cc15bf31e700f5f3a9f8fffb6c81
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- path: output/bamtools/versions.yml
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md5sum: eb7a144b8a97965d3482f6f96b8a8243
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- name: bamtools convert test_bamtools_convert_fasta
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_fasta -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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files:
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- path: output/bamtools/test.fasta
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md5sum: 52aeacf78571862b7e97c7d44ac8f827
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- path: output/bamtools/versions.yml
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md5sum: 42d19a2b2b07f05edb82b34369dfd754
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- name: bamtools convert test_bamtools_convert_fastq
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_fastq -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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files:
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- path: output/bamtools/test.fastq
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md5sum: e591c48daad2c56638e5d6f21f1f71c5
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- path: output/bamtools/versions.yml
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md5sum: 13f0bf8a3e1f8f527f96dabaa5c8051e
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- name: bamtools convert test_bamtools_convert_json
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_json -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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files:
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- path: output/bamtools/test.json
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md5sum: 04afed696f9f14da85a460353645d1f5
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- path: output/bamtools/versions.yml
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md5sum: 33d633dbd6209cb93c9b071f8c0ed3b3
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- name: bamtools convert test_bamtools_convert_pileup
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_pileup -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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files:
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- path: output/bamtools/test.pileup
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md5sum: e5a3cb4a3e1bf980a575fafce6a2826f
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- path: output/bamtools/versions.yml
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md5sum: fd3ad0edd1e085b1a002e0593d1d5814
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- name: bamtools convert test_bamtools_convert_sam
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_sam -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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files:
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- path: output/bamtools/test.sam
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md5sum: 61ab3d0de16a9da8b651f9c692e19d5e
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- path: output/bamtools/versions.yml
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md5sum: 4be470ce3cc0143ae5ae415b612a4965
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- name: bamtools convert test_bamtools_convert_yaml
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command: nextflow run tests/modules/bamtools/convert -entry test_bamtools_convert_yaml -c tests/config/nextflow.config
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tags:
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- bamtools
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- bamtools/convert
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files:
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- path: output/bamtools/test.yaml
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md5sum: 68b56f198da036fef33e150eb773dc3b
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- path: output/bamtools/versions.yml
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md5sum: 1116abc088c5edf11bee393961c18b3e
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