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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
9 lines
425 B
YAML
9 lines
425 B
YAML
- name: Run bismark deduplicate test workflow
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command: nextflow run ./tests/software/bismark/deduplicate -entry test_bismark_deduplicate -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark/deduplicate
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files:
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- path: output/bismark/test_methylated_paired_end.deduplicated.bam
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- path: output/bismark/test_methylated_paired_end.deduplication_report.txt
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md5sum: 3876d694f10c58f47e380ba8476a356b
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