nf-core_modules/tests/software/gatk4/revertsam/test.yml at 575df10781ffb60f508a8da6a34678b07b4be8fd - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-11 04:33:10 +00:00

Edmund Miller a3684d9594

Lint modules ci (#389 )

* ci: Add modules lint step

Moved it ahead of the nextflow install so ideally it'll fail before we
bother doing any more setup

* ci: _ => /

* Update tests/config/pytest_software.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-04-08 09:10:52 +01:00

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YAML

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 - name: gatk4 revertsam test_gatk4_revertsam
   command: nextflow run tests/software/gatk4/revertsam -entry test_gatk4_revertsam -c tests/config/nextflow.config
   tags:
     - gatk4
     - gatk4/revertsam
   files:
     - path: output/gatk4/test.reverted.bam
       md5sum: f778310b18b83b49929eb648594f96dc