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04c3684db7
* initial 'modules create' of minia * fixed tests * finished meta.yml * fixed filters.yml * resolved issues in pytest_software.yml * add newline * Update software/minia/main.nf * fixing a bunch of module tests * remove vscode * fixed minia Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
14 lines
569 B
Text
14 lines
569 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HOMER_ANNOTATEPEAKS } from '../../../../software/homer/annotatepeaks/main.nf' addParams( options: [:] )
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workflow test_homer_annotatepeaks {
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input = [ [ id:'test'],
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file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true)
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]
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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gtf = file(params.test_data['sarscov2']['genome']['genome_gtf'], checkIfExists: true)
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HOMER_ANNOTATEPEAKS ( input, fasta, gtf )
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}
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