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https://github.com/MillironX/nf-core_modules.git
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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
31 lines
1.3 KiB
YAML
31 lines
1.3 KiB
YAML
- name: salmon index
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command: nextflow run ./tests/software/salmon/index -entry test_salmon_index -c tests/config/nextflow.config
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tags:
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- salmon
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- salmon/index
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files:
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- path: ./output/index/salmon/ref_indexing.log
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- path: ./output/index/salmon/refseq.bin
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md5sum: 79c4ddf34be3a98d5a7b9d153629a6f7
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- path: ./output/index/salmon/versionInfo.json
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md5sum: 204865f645102587c4953fccb256797c
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- path: ./output/index/salmon/complete_ref_lens.bin
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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- path: ./output/index/salmon/mphf.bin
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md5sum: 53669a47610e33e031faafd32703b714
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- path: ./output/index/salmon/pre_indexing.log
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- path: ./output/index/salmon/ctable.bin
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- path: ./output/index/salmon/duplicate_clusters.tsv
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md5sum: 51b5292e3a874119c0e1aa566e95d70c
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- path: ./output/index/salmon/reflengths.bin
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md5sum: f57562f1fca3ae7b133f895ae13c3d08
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- path: ./output/index/salmon/info.json
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md5sum: 61ff4d3471134c280668355ddd39e99f
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- path: ./output/index/salmon/refAccumLengths.bin
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md5sum: 8d1970505b2b08ca0eb5ff7722b48cde
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- path: ./output/index/salmon/ctg_offsets.bin
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md5sum: 27a76542337df436436e66017f66dd25
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- path: ./output/index/salmon/rank.bin
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md5sum: 3f34dca1ec26cdf89a6d19b1d1c07e71
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- path: ./output/index/salmon/pos.bin
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- path: ./output/index/salmon/seq.bin
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