mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
55 lines
1.9 KiB
YAML
55 lines
1.9 KiB
YAML
- name: shovill with spades
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
- shovill/spades
|
|
files:
|
|
- path: output/shovill/contigs.gfa
|
|
md5sum: 277af5d8ae8a0d2432db59a316226828
|
|
- path: output/shovill/spades.fasta
|
|
md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
|
|
# MD5sum not reproducible (timestamp)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/shovill.corrections
|
|
- path: output/shovill/shovill.log
|
|
|
|
- name: shovill with megahit
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill_megahit -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
- shovill/megahit
|
|
files:
|
|
- path: output/shovill/shovill.corrections
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
# MD5sum not reproducible (timestamp, contig order)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/contigs.fastg
|
|
- path: output/shovill/megahit.fasta
|
|
- path: output/shovill/shovill.log
|
|
|
|
- name: shovill with skesa
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill_skesa -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
- shovill/skesa
|
|
files:
|
|
- path: output/shovill/shovill.corrections
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/shovill/skesa.fasta
|
|
md5sum: c0c2d11b633310eb1437345cb599c33c
|
|
# MD5sum not reproducible (timestamp)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/shovill.log
|
|
|
|
- name: shovill with velvet
|
|
command: nextflow run ./tests/software/shovill -entry test_shovill_velvet -c tests/config/nextflow.config
|
|
tags:
|
|
- shovill
|
|
- shovill/velvet
|
|
files:
|
|
# MD5sum not reproducible (timestamp, contig order)
|
|
- path: output/shovill/contigs.fa
|
|
- path: output/shovill/contigs.LastGraph
|
|
- path: output/shovill/shovill.corrections
|
|
- path: output/shovill/shovill.log
|
|
- path: output/shovill/velvet.fasta
|