mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
57b43ed3de
* Update meta.yml by fixing html pattern expected Fixed html pattern typo: Before: pattern: "*.thml" After fix: pattern: "*.html" * main.nf for bbmap_clumpify * meta.yml for bbmap_clumpify * bbmap/clumpify via Gitpod and @mahesh-panchal guide * small changes to tests * explicit mention of output file pattern - *.clumped.fastq.gz * Update modules/bbmap/clumpify/main.nf Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> * Update modules/bbmap/clumpify/main.nf Accepted @mahesh-panchal suggestions Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
49 lines
1.3 KiB
YAML
49 lines
1.3 KiB
YAML
name: bbmap_clumpify
|
|
description: Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates
|
|
keywords:
|
|
- clumping fastqs
|
|
- smaller fastqs
|
|
- deduping
|
|
- fastq
|
|
tools:
|
|
- bbmap:
|
|
description: BBMap is a short read aligner, as well as various other bioinformatic tools.
|
|
homepage: https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/clumpify-guide/
|
|
documentation: https://www.biostars.org/p/225338/
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ["UC-LBL license (see package)"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: |
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
|
respectively.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: The reordered/clumped (and if necessary deduped) fastq reads
|
|
pattern: "*.clumped.fastq.gz"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- log:
|
|
type: file
|
|
description: Clumpify log file
|
|
pattern: "*clumpify.log"
|
|
|
|
authors:
|
|
- "@tamuanand"
|