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25 lines
653 B
Text
25 lines
653 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BUSCO } from '../../../modules/busco/main.nf'
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// This tests genome decompression, empty input channels and data download
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workflow test_busco {
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input = [
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[ id:'test', single_end:false ], // meta map
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[
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file( params.test_data['bacteroides_fragilis']['genome']['genome_fna_gz'], checkIfExists: true),
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file( params.test_data['candidatus_portiera_aleyrodidarum']['genome']['genome_fasta'], checkIfExists: true)
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]
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]
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BUSCO (
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input,
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'bacteria_odb10',
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[], // Download busco lineage
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[], // No config
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)
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}
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