nf-core_modules/software/last
aleksandrabliznina 0745213729
New last/mafconvert module to convert MAF alignments. (#527)
* New last/mafconvert module to convert MAF alignments.

The `maf-convert` tool distributed with [LAST](https://gitlab.com/mcfrith/last)
reads alignmnts in [MAF](https://genome-asia.ucsc.edu/FAQ/FAQformat.html#format5)
format and converts them in another format (axt, blast, blasttab, chain,
gff, html, psl, sam, tab).

This new module is part of the work described in Issue #464. During this
development, we fix the versiob of LAST to 1219 to ensure consistency.
We will upgrade it later.

* Delete white space.

* Update the function.nf file to the dev version.
2021-06-09 08:38:57 +02:00
..
dotplot New last/dotplot module for pairwise similarity plots (#529) 2021-06-08 11:13:51 +02:00
lastal New last/lastal module to align query sequences on a target index (#510) 2021-05-25 22:10:48 +01:00
lastdb Update comments with new style (#497) 2021-05-12 14:56:46 +01:00
mafconvert New last/mafconvert module to convert MAF alignments. (#527) 2021-06-09 08:38:57 +02:00
mafswap New module last/mafswap to reorder sequences in alignments (#500) 2021-05-19 08:59:23 +01:00
postmask New module last/postmask to filter alignment files (#526) 2021-06-08 11:14:08 +02:00
split New last/split module to find split alignments. (#511) 2021-05-24 20:15:57 +01:00
train New last/train module to train alignment parameters. (#492) 2021-05-19 08:37:08 +01:00