mirror of
https://github.com/MillironX/nf-core_modules.git
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2ed9b6ae28
* new raxml module * new raxml module * pass in args for bootstrap and add test for support file * remove unnecessary tag * ensure tags meet guidleines * Apply suggestions from code review * Update to latest functions file Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
38 lines
1.1 KiB
YAML
38 lines
1.1 KiB
YAML
name: raxmlng
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description: RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
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keywords:
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- phylogeny
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- newick
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- maximum likelihood
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tools:
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- raxmlng:
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description: RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
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homepage: https://github.com/amkozlov/raxml-ng
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documentation: https://github.com/amkozlov/raxml-ng/wiki
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tool_dev_url: https://github.com/amkozlov/raxml-ng
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doi: doi.org/10.1093/bioinformatics/btz305
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licence: ['GPL v2-or-later']
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input:
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- alignment:
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type: file
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description: A FASTA format multiple sequence alignment file
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pattern: "*.{fasta,fas,fa,mfa}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- phylogeny:
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type: file
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description: A phylogeny in Newick format
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pattern: "*.{raxml.bestTree}"
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- phylogeny_bootstrapped:
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type: file
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description: A phylogeny in Newick format with bootstrap values
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pattern: "*.{raxml.support}"
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authors:
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- "@avantonder"
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- "@aunderwo"
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