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* added files * edited files * edited files * edited file * test(sequenzautils): Remove md5sum Co-authored-by: kaurravneet4123 <kaurravneet4123@yahoo.com@users.noreply.github.com> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com>
38 lines
1.3 KiB
YAML
38 lines
1.3 KiB
YAML
name: sequenzautils_gcwiggle
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description: Sequenza-utils gc_wiggle computes the GC percentage across the sequences, and returns a file in the UCSC wiggle format, given a fasta file and a window size.
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keywords:
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- gc_wiggle
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tools:
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- sequenzautils:
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description: Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package. The program -gc_wiggle- takes fasta file as an input, computes GC percentage across the sequences and returns a file in the UCSC wiggle format.
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homepage: https://sequenza-utils.readthedocs.io/en/latest/index.html
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documentation: https://sequenza-utils.readthedocs.io/en/latest/index.html
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doi: 10.1093/annonc/mdu479
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: FASTA file
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pattern: "*.{fasta}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- wig:
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type: file
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description: GC Wiggle track file
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pattern: "*.{wig.gz}"
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authors:
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- "@kaurravneet4123"
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