millironx/nf-core_modules
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nf-core_modules/tests/software
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Florian Wuennemann 592002aa23
add picard_collectwgsmetrics (#304) 
* Added new module picard/collectwgsmetrics.

* Removed unused outputs from meta.yml

* Added version.txt file back to meta.yml

* Updated test.yml

* Removed md5sum from test.yaml and added contain tests.

* Update functions.nf

Fixed missing newline formatting.

* Update main.nf

Fixed missing newline formatting.

* style(picard): Remove trailing whitespace

Co-authored-by: Kevin Menden <kevin.menden@t-online.de>
Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com>
2021-03-22 17:05:59 +01:00
..
bandage/image Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bcftools Exchange VCF data by sarscov2 data (#261) 2021-03-09 10:04:08 +01:00
bedtools Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bismark add bismark/summary (#295) 2021-03-22 14:58:54 +01:00
blast Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bowtie Fix bowtie builds (#273) 2021-03-15 15:39:42 +01:00
bowtie2 Fix bowtie builds (#273) 2021-03-15 15:39:42 +01:00
bwa Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bwamem2 Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
bwameth Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
cat/fastq Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
cutadapt Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
dsh Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
fastp Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
fastqc Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
gatk4 add mergebamalignment (#259) 2021-03-17 15:56:56 +01:00
gffread Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
gunzip Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
ivar Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
kraken2/run Add kraken2 run module (#266) 2021-03-18 13:08:06 +00:00
methyldackel Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
minia Adding minia for viralrecon (#267) 2021-03-17 12:54:15 +01:00
minimap2/align Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
mosdepth Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
multiqc Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
pangolin add task.cpus to pangolin (#263) 2021-03-10 09:02:23 +01:00
picard add picard_collectwgsmetrics (#304) 2021-03-22 17:05:59 +01:00
preseq/lcextrap Fix preseq tests 2021-02-03 17:28:44 +00:00
qualimap/bamqc Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
quast Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
salmon Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
samtools add samtools merge (#296) 2021-03-22 13:48:23 +01:00
seacr/callpeak Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
seqkit/split2 Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
seqwish/induce Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
spades Add spades module (#277) 2021-03-18 13:48:38 +00:00
star Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
stringtie Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
tabix Exchange VCF data by sarscov2 data (#261) 2021-03-09 10:04:08 +01:00
tiddit/sv fix: update tiddit_sv tests (#272) 2021-03-15 14:02:20 +00:00
trimgalore Converge test data usage (#249) 2021-03-04 10:10:57 +00:00
ucsc/bedgraphtobigwig Change path to tests 2021-02-03 16:44:56 +00:00
untar Converge test data usage (#249) 2021-03-04 10:10:57 +00:00