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https://github.com/MillironX/nf-core_modules.git
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9402595711
* First step into creating a seqtk/mergepe module to interleave fastQ input * First rewrite of main.nf to make the module perform the desired (interleave/merge of pe reads) task * Modifications to test the new seqtk/mergepe module. * Improving the seqtk/mergepe module to output single end reads as well, and making sure tests work * Modified so that gzip uses -n and that single read entries are symlinked with ln -s instead of copied, therefore updated test.yml as well. * Fix trailing whitespaces Co-authored-by: Daniel Lundin <daniel.lundin@lnu.se>
17 lines
637 B
YAML
17 lines
637 B
YAML
- name: seqtk mergepe test_seqtk_mergepe_single_end
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command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_single_end -c tests/config/nextflow.config
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tags:
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- seqtk/mergepe
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- seqtk
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files:
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- path: output/seqtk/test.processed.fastq.gz
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md5sum: e325ef7deb4023447a1f074e285761af
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- name: seqtk mergepe test_seqtk_mergepe_paired_end
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command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_paired_end -c tests/config/nextflow.config
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tags:
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- seqtk/mergepe
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- seqtk
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files:
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- path: output/seqtk/test.processed.fastq.gz
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md5sum: 3f094ef62d9bfe06aa25174a06bc7d04
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