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https://github.com/MillironX/nf-core_modules.git
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16e8d21477
* add nanoplot * add Nanopore 100 read subset bam and fastq * add nanoplot module and sequencing_summary.txt * Update pytest_software.yml * Update main.nf * test directory path * testing one output file * Update main.nf * fix typo * remove path to test outputs (it worked locally) * use test_data.config in test * add meta.yml * allowing either summary.txt or fastq.gz inputs * fix linting and test.yml * test whether github check can catch the output * add summary.txt test output paths * check Nanoplot-report.html output
17 lines
505 B
YAML
17 lines
505 B
YAML
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- name: nanoplot_summary
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command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_summary -c tests/config/nextflow.config
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tags:
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- nanoplot
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files:
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- path: ./output/nanoplot/NanoPlot-report.html
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contains:
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- "report"
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- name: nanoplot_fastq
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command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_fastq -c tests/config/nextflow.config
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tags:
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- nanoplot
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files:
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- path: ./output/nanoplot/NanoPlot-report.html
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contains:
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- "report"
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