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f90b8ecb24
* fix the test path in main.nf for salmon/index and quant * fix typo * Apply suggestions from code review * Apply suggestions from code review * Apply suggestions from code review Mannnn, hopefully I finally got it right :) * replaced /salmon/salmon/ with /index/salmon/ Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
12 lines
456 B
Text
12 lines
456 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SALMON_INDEX } from '../../../../software/salmon/index/main.nf' addParams( options: [:] )
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workflow test_salmon_index {
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genome_fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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transcript_fasta = file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true)
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SALMON_INDEX ( genome_fasta, transcript_fasta )
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}
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