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98ed71c8f6
* feat(homer): Add pos2bed module * test(homer): Pass bed format * test(homer): Add upstream dependencies to avoid regressions * Update modules/homer/pos2bed/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: "homer_pos2bed"
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description: Coverting from HOMER peak to BED file formats
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keywords:
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- peaks
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tools:
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- "homer":
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description: |
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HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
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homepage: "http://homer.ucsd.edu/homer/index.html"
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documentation: "http://homer.ucsd.edu/homer/"
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tool_dev_url: "http://homer.ucsd.edu/homer/ngs/miscellaneous.html"
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doi: 10.1016/j.molcel.2010.05.004.
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licence: ["GPL-3.0-or-later"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- tagDir:
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type: directory
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description: "The 'Tag Directory'"
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pattern: "tagDir"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: BED file
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pattern: "*.bed"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@Emiller88"
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