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20 lines
860 B
Text
20 lines
860 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_ISEC } from '../../../../software/bcftools/isec/main.nf' addParams( options: ['args': '--nfiles +2 --output-type z --no-version'] )
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workflow test_bcftools_isec {
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def input = []
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input = [ [ id:'test' ], // meta map
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[ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true),
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file("${launchDir}/tests/data/vcf/test2.vcf.gz", checkIfExists: true),
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file("${launchDir}/tests/data/vcf/test3.vcf.gz", checkIfExists: true)],
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[ file("${launchDir}/tests/data/vcf/test.vcf.gz.tbi", checkIfExists: true),
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file("${launchDir}/tests/data/vcf/test2.vcf.gz.tbi", checkIfExists: true),
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file("${launchDir}/tests/data/vcf/test3.vcf.gz.tbi", checkIfExists: true) ]]
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BCFTOOLS_ISEC ( input )
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}
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