mirror of
https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
91 lines
3.8 KiB
YAML
91 lines
3.8 KiB
YAML
- name: lima test_lima_bam
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command: nextflow run ./tests/modules/lima -entry test_lima_bam -c ./tests/config/nextflow.config -c ./tests/modules/lima/nextflow.config
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tags:
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- lima
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files:
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- path: output/lima/test.fl.NEB_5p--NEB_Clontech_3p.bam
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md5sum: 14b51d7f44e30c05a5b14e431a992097
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- path: output/lima/test.fl.NEB_5p--NEB_Clontech_3p.bam.pbi
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md5sum: 6ae7f057304ad17dd9d5f565d72d3f7b
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- path: output/lima/test.fl.NEB_5p--NEB_Clontech_3p.consensusreadset.xml
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contains: ["ConsensusReadSet"]
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- path: output/lima/test.fl.json
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contains: ["ConsensusReadSet"]
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- path: output/lima/test.fl.lima.clips
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md5sum: fa03bc75bd78b2648a139fd67c69208f
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- path: output/lima/test.fl.lima.counts
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md5sum: 842c6a23ca2de504ced4538ad5111da1
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- path: output/lima/test.fl.lima.guess
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md5sum: d3675af3ca8a908ee9e3c231668392d3
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- path: output/lima/test.fl.lima.report
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md5sum: dc073985322ae0a003ccc7e0fa4db5e6
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- path: output/lima/test.fl.lima.summary
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md5sum: bcbcaaaca418bdeb91141c81715ca420
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- name: lima test_lima_fa
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command: nextflow run ./tests/modules/lima -entry test_lima_fa -c ./tests/config/nextflow.config -c ./tests/modules/lima/nextflow.config
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tags:
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- lima
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files:
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- path: output/lima/test.fl.lima.clips
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md5sum: 1012bc8874a14836f291bac48e8482a4
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- path: output/lima/test.fl.lima.counts
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md5sum: a4ceaa408be334eaa711577e95f8730e
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- path: output/lima/test.fl.lima.guess
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md5sum: 651e5f2b438b8ceadb3e06a2177e1818
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- path: output/lima/test.fl.lima.report
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md5sum: bd4a8bde17471563cf91aab4c787911d
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- path: output/lima/test.fl.lima.summary
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md5sum: 03be2311ba4afb878d8e547ab38c11eb
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- name: lima test_lima_fa_gz
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command: nextflow run ./tests/modules/lima -entry test_lima_fa_gz -c ./tests/config/nextflow.config -c ./tests/modules/lima/nextflow.config
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tags:
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- lima
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files:
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- path: output/lima/test.fl.lima.clips
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md5sum: 1012bc8874a14836f291bac48e8482a4
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- path: output/lima/test.fl.lima.counts
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md5sum: a4ceaa408be334eaa711577e95f8730e
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- path: output/lima/test.fl.lima.guess
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md5sum: 651e5f2b438b8ceadb3e06a2177e1818
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- path: output/lima/test.fl.lima.report
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md5sum: bd4a8bde17471563cf91aab4c787911d
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- path: output/lima/test.fl.lima.summary
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md5sum: 03be2311ba4afb878d8e547ab38c11eb
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- name: lima test_lima_fq
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command: nextflow run ./tests/modules/lima -entry test_lima_fq -c ./tests/config/nextflow.config -c ./tests/modules/lima/nextflow.config
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tags:
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- lima
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files:
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- path: output/lima/test.fl.NEB_5p--NEB_Clontech_3p.fastq
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md5sum: ef395f689c5566f501e300bb83d7a5f2
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- path: output/lima/test.fl.lima.clips
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md5sum: 5c16ef8122f6f1798acc30eb8a30828c
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- path: output/lima/test.fl.lima.counts
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md5sum: 767b687e6eda7b24cd0e577f527eb2f0
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- path: output/lima/test.fl.lima.guess
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md5sum: 31b988aab6bda84867e704b9edd8a763
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- path: output/lima/test.fl.lima.report
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md5sum: ad2a9b1eeb4cda4a1f69ef4b7520b5fd
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- path: output/lima/test.fl.lima.summary
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md5sum: e91d3c386aaf4effa63f33ee2eb7da2a
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- name: lima test_lima_fq_gz
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command: nextflow run ./tests/modules/lima -entry test_lima_fq_gz -c ./tests/config/nextflow.config -c ./tests/modules/lima/nextflow.config
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tags:
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- lima
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files:
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- path: output/lima/test.fl.NEB_5p--NEB_Clontech_3p.fastq.gz
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md5sum: 32c11db85f69a1b4454b6bbd794b6df2
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- path: output/lima/test.fl.lima.clips
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md5sum: 5c16ef8122f6f1798acc30eb8a30828c
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- path: output/lima/test.fl.lima.counts
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md5sum: 767b687e6eda7b24cd0e577f527eb2f0
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- path: output/lima/test.fl.lima.guess
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md5sum: 31b988aab6bda84867e704b9edd8a763
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- path: output/lima/test.fl.lima.report
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md5sum: ad2a9b1eeb4cda4a1f69ef4b7520b5fd
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- path: output/lima/test.fl.lima.summary
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md5sum: e91d3c386aaf4effa63f33ee2eb7da2a
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