nf-core_modules/modules/lofreq/call/meta.yml
Gregor Sturm 906577873b
Bulk update modules to use versions.yml (#739)
* New functions.nf

* Convert code to create versions.yml

* Update meta.yml

* update output channel

* Fix more meta.yml

* Manually update remaining modules

* remove superflous echo

* Fix misformatted meta.yml files

* Fix yaml, was list instead of dict

* fix version for bcftools

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00

46 lines
1.1 KiB
YAML

name: lofreq_call
description: Lofreq subcommand to call low frequency variants from alignments
keywords:
- variant calling
- low frequency variant calling
- lofreq
- lofreq/call
tools:
- lofreq:
description: A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data
homepage: https://csb5.github.io/lofreq/
documentation: https://csb5.github.io/lofreq/commands/
doi: "10.1093/nar/gks918 "
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM input file
pattern: "*.{bam}"
- fasta:
type: file
description: The reference fasta file
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "versions.yml"
- vcf:
type: file
description: VCF output file
pattern: "*.{vcf}"
authors:
- "@bjohnnyd"