nf-core_modules/tests/modules/ampir/main.nf
2022-05-25 13:27:10 +02:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { AMPIR } from '../../../modules/ampir/main.nf'
workflow test_ampir {
fasta = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['candidatus_portiera_aleyrodidarum']['genome']['proteome_fasta'], checkIfExists: true),
]
cut_off = "80"
model = "precursor"
output_name = "prediction.fasta"
AMPIR ( fasta, cut_off, model, output_name )
}