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fdb1664885
* Add deeptools bamcoverage * remove todo string * Add in when * fix c&p version format error * Fix md5sums Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
27 lines
923 B
Text
27 lines
923 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { DEEPTOOLS_BAMCOVERAGE } from '../../../../modules/deeptools/bamcoverage/main.nf'
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workflow test_deeptools_bamcoverage_bam {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
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]
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DEEPTOOLS_BAMCOVERAGE ( input )
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}
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workflow test_deeptools_bamcoverage_cram {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_cram'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_cram_crai'], checkIfExists: true)
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]
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DEEPTOOLS_BAMCOVERAGE ( input )
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}
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