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https://github.com/MillironX/nf-core_modules.git
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f47c27edfb
* update test yml star align * update test yml stringtie merge * update star genomegenerate yml * update test yml rsem calculateexpression Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
66 lines
2.9 KiB
YAML
66 lines
2.9 KiB
YAML
- name: rsem calculateexpression test_rsem_calculateexpression
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command: nextflow run tests/modules/rsem/calculateexpression -entry test_rsem_calculateexpression -c tests/config/nextflow.config
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tags:
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- rsem
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- rsem/calculateexpression
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files:
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- path: output/index/rsem/Genome
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md5sum: a654229fbca6071dcb6b01ce7df704da
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- path: output/index/rsem/Log.out
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- path: output/index/rsem/SA
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md5sum: 8c3edc46697b72c9e92440d4cf43506c
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- path: output/index/rsem/SAindex
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md5sum: fd05c149960e72642a8d7c860528ae81
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- path: output/index/rsem/chrLength.txt
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md5sum: c81f40f27e72606d7d07097c1d56a5b5
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- path: output/index/rsem/chrName.txt
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md5sum: 5ae68a67b70976ee95342a7451cb5af1
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- path: output/index/rsem/chrNameLength.txt
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md5sum: b190587cae0531f3cf25552d8aa674db
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- path: output/index/rsem/chrStart.txt
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md5sum: 8d3291e6bcdbe9902fbd7c887494173f
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- path: output/index/rsem/exonGeTrInfo.tab
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md5sum: d04497f69d6ef889efd4d34fe63edcc4
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- path: output/index/rsem/exonInfo.tab
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md5sum: 0d560290fab688b7268d88d5494bf9fe
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- path: output/index/rsem/geneInfo.tab
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md5sum: 8b608537307443ffaee4927d2b428805
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- path: output/index/rsem/genome.chrlist
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md5sum: b190587cae0531f3cf25552d8aa674db
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- path: output/index/rsem/genome.fasta
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md5sum: f315020d899597c1b57e5fe9f60f4c3e
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- path: output/index/rsem/genome.grp
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md5sum: c2848a8b6d495956c11ec53efc1de67e
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- path: output/index/rsem/genome.idx.fa
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md5sum: 050c521a2719c2ae48267c1e65218f29
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- path: output/index/rsem/genome.n2g.idx.fa
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md5sum: 050c521a2719c2ae48267c1e65218f29
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- path: output/index/rsem/genome.seq
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md5sum: 94da0c6b88c33e63c9a052a11f4f57c1
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- path: output/index/rsem/genome.ti
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md5sum: c9e4ae8d4d13a504eec2acf1b8589a66
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- path: output/index/rsem/genome.transcripts.fa
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md5sum: 050c521a2719c2ae48267c1e65218f29
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- path: output/index/rsem/genomeParameters.txt
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md5sum: 2fe3a030e1706c3e8cd4df3818e6dd2f
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- path: output/index/rsem/sjdbInfo.txt
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md5sum: 5690ea9d9f09f7ff85b7fd47bd234903
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- path: output/index/rsem/sjdbList.fromGTF.out.tab
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md5sum: 8760c33e966dad0b39f440301ebbdee4
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- path: output/index/rsem/sjdbList.out.tab
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md5sum: 9e4f991abbbfeb3935a2bb21b9e258f1
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- path: output/index/rsem/transcriptInfo.tab
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md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
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- path: output/rsem/test.genes.results
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md5sum: c7ec226f76736ea805771e73553ae359
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- path: output/rsem/test.isoforms.results
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md5sum: 99f7f80aa505b44ca429fdebbd7dd5d8
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- path: output/rsem/test.log
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- path: output/rsem/test.stat/test.cnt
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md5sum: 76249e6b2f3c104f414aae596ba2c2f4
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- path: output/rsem/test.stat/test.model
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md5sum: a7a4bc1734918ef5848604e3362b83e2
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- path: output/rsem/test.stat/test.theta
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md5sum: de2e4490c98cc5383a86ae8225fd0a28
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- path: output/rsem/test.transcript.bam
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md5sum: 7846491086c478858419667d60f18edd
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