mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
967fb22ded
* Update versions * update checksums + remove variables as input for applyvqsr * sneak in removal of values and provide them via modules.config * update another checksum * more checksums * move vairable to config * remove controlfreec, wrong branch * add line break
39 lines
1.7 KiB
YAML
39 lines
1.7 KiB
YAML
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/genome.bed.idx
|
|
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed_gz
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed_gz -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/genome.bed.gz.tbi
|
|
md5sum: 4bc51e2351a6e83f20e13be75861f941
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: e5003204702f83aabdb4141272c704d2
|
|
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/test.genome.vcf.idx
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: 08cd7c49cfb752fc2905f600106a0345
|
|
|
|
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf_gz
|
|
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf_gz -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/indexfeaturefile
|
|
files:
|
|
- path: output/gatk4/test.genome.vcf.gz.tbi
|
|
md5sum: fedd68eaddf8d31257853d9da8325bd3
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: b388d1681831a40264a7a27f67a8b247
|